NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211475_10042117

Scaffold Ga0211475_10042117


Overview

Basic Information
Taxon OID3300020468 Open in IMG/M
Scaffold IDGa0211475_10042117 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2518
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_018
CoordinatesLat. (o)35.7392Long. (o)14.3321Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000754Metagenome / Metatranscriptome906Y
F049611Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0211475_100421171F049611AGGAGMPLVKKRITVGAGATSDQILQGTTYEYVDPGTRLVIAAGDATSTYGGATNMNFTVNNSEFAKDALVSEEVTGQPFGWNNTAYVMNDTV
Ga0211475_100421175F000754N/ANSEFAKDALVSEEVTGQPFGWNNTAYVMNDTVTTGNVRNRPVITFTNTGGSSATIDVAIFIA

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