Scaffold Ga0211475_10022801

Overview

Basic Information

• Taxon OID: 3300020468
• Scaffold ID: Ga0211475_10022801
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3624
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7392
  • Long. (^o): 14.3321
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019668	Metagenome	228	N
F021557	Metagenome	218	N
F054939	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211475_100228014	F021557	GAGG	MRLLLCALLITSNAIACDYESDDLIQYEGHIESVRVLDKKVYPYVEDTRICTMHIESRIEGEWYSSRGKYIFGSNVSEDEACSHAESRAKSVVIKEHIPETVRSKRNLSCDLTEVRNSCKIIYMNVEMPVLGTQRVKLKTCEE
Ga0211475_100228015	F054939	GGA	MSVYTFTFITVVSMYLAYLWGRYLTKGEIAAEVANNTLNRLEREGFIKYVINKKTGQKDFVRFE
Ga0211475_100228018	F019668	N/A	MIENKQINEVEMTKQTIDYVGISGSQGSSFGFYFSTLENKDLVYTKTYLLKDLVNVLRTKYTLPNSYMASSSMDFATEEGFYHNGAASKVLSLASNIADSGKSIAEYTKKVLDEQVDIRNIEFSDLNKDEAEDWYTDGKPAFNK