NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211713_10001731

Scaffold Ga0211713_10001731


Overview

Basic Information
Taxon OID3300020467 Open in IMG/M
Scaffold IDGa0211713_10001731 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13574
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.1569Long. (o)-129.5943Alt. (m)Depth (m)155
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012583Metagenome / Metatranscriptome279Y
F025020Metagenome / Metatranscriptome203Y
F031447Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0211713_1000173115F012583GAGGMSLSQQIKIQEFDKYILQGGDQSLSNIEDLCTYGFVMMDTEPDEETFNDVVIDVIRKLKLALHLQ
Ga0211713_1000173123F031447AGGAGGMLRQYVITGTKTFTYYKTVQATDIVNAHLLAHEPTEEPEDDWTCHFDDDYDEPTEDNGLMVVKHIEDEGEI
Ga0211713_100017313F025020N/AMFPSTILETIKANTPAPARSFNINTNSRDLDFQVSTKQILQILRKNPQGMTLTEIAQAVDPNWQTMNCKRMFKQAIDPLCLRDEVRFTTSKSGKRQKYFPTRVSKRWLVRELFNQMKSAKSS
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