Scaffold Ga0211713_10000832

Overview

Basic Information

• Taxon OID: 3300020467
• Scaffold ID: Ga0211713_10000832
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20701
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (61.54%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.1569
  • Long. (^o): -129.5943
  • Depth (m): 155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022752	Metagenome / Metatranscriptome	213	Y
F025055	Metagenome	203	Y
F032303	Metagenome	180	N
F043609	Metagenome / Metatranscriptome	156	N
F046625	Metagenome	151	Y
F069319	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211713_1000083216	F069319	N/A	MLDNYIFIPTELPKKYRIQIDSIIKDIVDSKTDPYWKNYTDKEFNIDEQTAISVSCDKDDVKVISTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGVHINHPVLDQQIDFIEKLNPKFYFISRQRTNTRWLKYYFDNFNKDYNRNLIVSDQQYWVCGGKKDNCLQTIIYPKDFKVSLKPYK
Ga0211713_1000083217	F046625	N/A	MMYENFIIDDFLSDKELNSFTYNNKEEFKSSSGNLTLYYQKLLTSISIKIQKSIGEFSLRDAHIYDLKQPYRMHCDSGYYTIIVPLDEQPQGGLFIMNQWADKAYSLDDYYTQDFQSVLSFEERKEKIKEFDSNISLPDSLDFKHIGDKRGFGVKEYFTYNYNQAIMFPSGHFHCSQNVENFTNKKSLAIFTDVR
Ga0211713_1000083219	F043609	GGA	MRTDNQEFHNILKSVDFADVSDFWTVPYKEILEEVKDIPEDKWRKPFDADYKREGLNDLESNIYYPGSKGDLIPARGWRSVTALNETGDYRDQISKFTPVFNTENEYRNKVKEVREKSQWTDISHYLPTLQKFFEDKIFPYMYVGHIYVSALDAGGIVTEHNDIPDDSRPMLESDRVHSFNVLNTFNLVLNHVKSCYSCFNGKILPAYDGAIRWTNTGKQHWVVNMNKESQYQIIWQGLYKKSFRKLVKEKYKYSYGNNRQS
Ga0211713_1000083222	F032303	AGG	VIKHITEKEALDFVSKQEHKDEWHKDFYYWKRHLLALKNWPWLKKFYKGGKWLGHFDEELNGIYWYNLIEDEMYDGFLISSKVGVGMKLGRWLEKNIKYKTNWSCCDRRYVRFNERLGFEIKSIDNIDKREVFLLCRKKY
Ga0211713_1000083224	F025055	AGG	MIEKLLKADGKRYIKKTFDYKGEDNFAFLKNEVFWLNYLKSKWVPELEEVGDNYVITRYYGLDLNTLRNNKFKLADDLADQTLEMYKFFKEKNVFKLNGALSNLTMNGNQLVAFDWKWARFRTDKYKDYEIFSYEKWLSKIDSELVEKLKCMI
Ga0211713_100008324	F022752	GGA	MATLSNLLGGGSSSAIDHRKEGLPLFGVWGDDGNQNSNMNYRIFDSGYKNVGSPWGSVCNSTTNYRFGILGDASHAYSQDDHGTDVSHSDLTSQDYSSWTNWLKSMYQCDQYPHAQYYTSSKDGFISFHSYHHMTSSFEYQTGWTKLNMVLPEGIRPRRMFCNRRRTLREMNMGNNSCANIDAYLYTSHMLNTDNTYASGTGYNESTKMLVMVHSANEGSGSDKTIHVFKSSKCLNKVTRIKDYFDNLTATEYFTGSWTTDNNRDMTVAVGNNGWVGFGHKNGNSMRYAAFNCNTGLGLGTTDTARIFDSWQDFSGSTTTSYGANQGGQYYTKFNTTWDGTWGMIYGPYYYYGVGLCGFCMSLENPRKFIQVNETKSSRSNPWFAWGRTGFHGGWSDNTDGDTMRVYSWSFDPTDSDHTTTTKVYRGSTSGDGVVRDDDAHQGDEAVTNKTGNVGLSANRCFLHGGYHSTCYPVMMQVDWWGNYGNTDSTYGGNGFNTSA