Scaffold Ga0211640_10249067

Overview

Basic Information

• Taxon OID: 3300020465
• Scaffold ID: Ga0211640_10249067
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 993
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9687
  • Long. (^o): -100.7324
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030779	Metagenome / Metatranscriptome	184	Y
F051197	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211640_102490672	F030779	GGAGG	MQIKSQSGAVVIDYYPTKTRSNVKLHDKVLKILTLNGKTFLKKVISTENYINDVYNRIHNFKFIDNNVDHSNLHQFITLKEV
Ga0211640_102490675	F051197	GAGG	MKTMTKYEWNEEFYRELVIDYNYRFPKFMEISYPIQQEESNNE