Scaffold Ga0211640_10131110

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211640_10131110

Scaffold Ga0211640_10131110

Overview

Basic Information
Taxon OID	3300020465 Open in IMG/M
Scaffold ID	Ga0211640_10131110 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1432
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_111
Coordinates	Lat. (^o)	-16.9687	Long. (^o)	-100.7324	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032681	Metagenome	179	Y
F087042	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211640_101311101	F032681	N/A	VKDLAKKLNIEVGMSTSMAVEEAMTYLTMSFHKRNVDSIKAAELLRWWLSDFQDKELEYFEIRVDLAKQVRNR
Ga0211640_101311104	F087042	AGGAG	MRNIKLNVSRSVEQMCIASFRSMFVERLEDGVDLTPKYIEMLVKEHCEPYMIVTQGFTHDLLANALDYMDWEYISYHINHPVYKENKDGR

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