Scaffold Ga0211640_10030775

Overview

Basic Information

• Taxon OID: 3300020465
• Scaffold ID: Ga0211640_10030775
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3203
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9687
  • Long. (^o): -100.7324
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003385	Metagenome	490	N
F015325	Metagenome / Metatranscriptome	255	Y
F024328	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211640_100307753	F024328	N/A	MTITELEKEILKAVKVESQIPLTSKQGYIDLAKFIRKLFNEYKNE
Ga0211640_100307754	F015325	N/A	MTNKKWLVIERTNYGENNDSFSIAKIGDTVEQATTYKVHLDALNDRKNRTYFIASDIDTVMERVISLHNKKVNEEKPLILKDEVKDTSSEMPF
Ga0211640_100307755	F003385	N/A	MGYYYNIPLTNRKEKMTNKLDLNNIPENFVITYYANKHKKIITRNGSWTKPTDIMTTGKAFISKNGVVCFIYWDNDAEPDEKGNQWRMAKNPMTIKATQTIEVENDK