Scaffold Ga0211640_10012770

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211640_10012770

Scaffold Ga0211640_10012770

Overview

Basic Information
Taxon OID	3300020465 Open in IMG/M
Scaffold ID	Ga0211640_10012770 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5095
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_111
Coordinates	Lat. (^o)	-16.9687	Long. (^o)	-100.7324	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007266	Metagenome / Metatranscriptome	354	Y
F077947	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211640_100127703	F077947	AGG	MIEFILGLVMGYALSGDLGEPVPSEIITYSDSGKVVKVYRSNAFAHRYYPNALAIGWNTNDYRYWETRPHITPIYTKSIIINKKPKKKPKPRTEDDK
Ga0211640_100127704	F007266	GGA	MTKPIGQDSSLNISLPMLFQAVAVIGAMVWGYGELNGRISFLEYQVKINEEHISAIEENAKASQNAEIPADIRQNEKIQTLEKEVERLRSEQRD

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