NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211640_10000061

Scaffold Ga0211640_10000061


Overview

Basic Information
Taxon OID3300020465 Open in IMG/M
Scaffold IDGa0211640_10000061 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64862
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (53.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9687Long. (o)-100.7324Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000983Metagenome / Metatranscriptome814Y
F075971Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0211640_1000006167F075971AGGAMKKIIVALMIMLGSIGLANAKTIDYLVTGTPGGTAYDNAELFIPILEAETGYKFNKIIVDSTVGATIYLKTSKNPSVWIQNTLEHETPGNDLQASADSWIGTGWGRAMAFCSNDTLAEAVKKLKAGKRLTFAVSNSYGQHLIDPLVAVTGTPMKFVPYGSSGKSLKGFVAGDTDMLFTNMPKAVSGVKKNGISCWANTGPTKILDMEPMSDLFPDYKYNDIQTFTYLDSANMSESDIATLRAAWNKVLTADSVAGHIKNKKLFHPSVYGDLSAEEWSAVLDKAGKNWVGK
Ga0211640_1000006169F000983N/AMKSYFILDCDKQQKIADSLYGYYVGITANNKPKEFWTHLTRKQITDYLSIPGLELTKWFDSLGLKVRDMSFTITNENIQTGIHKDEPPVVAKINFPVLNTKDTYNVWFDENKNEIDRVECTKPIVLRSDILHTVEMGKDAKYPRIQFSFCFYNEPLNLLN
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