NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211694_10062208

Scaffold Ga0211694_10062208


Overview

Basic Information
Taxon OID3300020464 Open in IMG/M
Scaffold IDGa0211694_10062208 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1455
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.1495Long. (o)-43.2486Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007266Metagenome / Metatranscriptome354Y
F077947Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0211694_100622085F007266N/AMTKPIGQDSSLNISLPMLFQAVAVIGAMVWGYGELNGRISFLEYQVKINEEHIAAIEEDAKTSQNAEIPADIRQNEKIKTLEKEVERLRIGKRN
Ga0211694_100622086F077947N/AGLAVGMMISGSDLGEPVPYQTITYSDSGKVVNIYNTSAFKHRYMPNAYAIGWNTNDYRYWDTKDFIKPVYTKSIVINKKPKPRPKPRTENEK

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