Scaffold Ga0211694_10010525

Overview

Basic Information

• Taxon OID: 3300020464
• Scaffold ID: Ga0211694_10010525
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3488
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.1495
  • Long. (^o): -43.2486
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019328	Metagenome / Metatranscriptome	230	Y
F051944	Metagenome / Metatranscriptome	143	Y
F085553	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211694_100105252	F019328	AGGAGG	MPNIFESPKSIKTWAIKLANACGGQKVEKSIVLTQLNTGRLAELLDEFVQDHNENTMKIADQLEESNKEEEE
Ga0211694_100105255	F051944	AGGAG	MIYQVQSVSLYGGRMTWEFDNKHDAQCKVRELKDFGSMFIVKLVELEAATK
Ga0211694_100105258	F085553	GGAGG	MKTIYKEPKTNRPQINEVESIKKLNSTGSLRRVEGTRYDLIKSYATPIAYVVDVENGSFINETKVILCNEFYSMTTRKHQAKVREFAEITGAAIGEFDLGGFYKRAEIDGVNVKGGVNY