Scaffold Ga0211694_10007684

Overview

Basic Information

• Taxon OID: 3300020464
• Scaffold ID: Ga0211694_10007684
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4046
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.1495
  • Long. (^o): -43.2486
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F019158	Metagenome	231	Y
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211694_1000768410	F019158	N/A	MKMTIVIDSEDIQGIEAAVKMTRLMHEKYVGPASYRESFGKIEFIKMLRKFMRESVAHLKDEEDNQVKDLDDLANLRNAKRFADRMFRGER
Ga0211694_100076843	F086310	GGAGG	VQVGDIVRHFLTEQIGIVMTITNADSSIGAIQVLWTTQGESLFGPGTKEWCSKNSLTVLTTA
Ga0211694_100076848	F004771	GGAGG	MRIKKGDLVKMKTHDTGLVGLVVEMHPRGAGRTAQAGIRWLGGSGKIDWEPQAWLEVVSEGR