Scaffold Ga0211676_10142991

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10142991
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1514
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040324	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_101429914	F040324	N/A	PSLEKKNYLRKRVVEQIQTRKKIISDFLKDLSLKEKQITTSKKTGINENTITRMKNNDNFVTSFDNAIALYSVYPELNKMFLNQWIELSGLQTINEFEVQINGSITKNFDILPLHPNEISSLKIPQNIYINFKPMIVYRYQSSTSPLNRQLFIFSQRGLDTLSCENFYKFFPDKICLAIADDNKQYVGYLTKEGNDHFVVNPINKKIYKNSLKINEVYRLILTINDDWSMTSDQ