Scaffold Ga0211676_10051813

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10051813
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2906
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024796	Metagenome / Metatranscriptome	204	Y
F030771	Metagenome / Metatranscriptome	184	Y
F071290	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1005181311	F030771	AGGAG	MQLLEVMNMDSLVLHSREGEQGADGRMIRKELRRREAIGYWKGDFAKYEIKDEEPESVVGTVRIVS
Ga0211676_100518133	F024796	GGAG	MGQYKDLVDRQRKLLEVENWRKKVRMMIANITPEKKLWTTTYNDNSQLFEKLQDNRWTSTRKPSPMTIQDCVEEMGRQAQDVKYRK
Ga0211676_100518139	F071290	AGGAG	MPAKWKESEVVIPRDQRGRIMRTDNPVKTYTHYYLKQTPSAELIEYLNGYSSKPKKIQIARNELVRRGYTITWKPKVAI