Scaffold Ga0211676

Basic Information
Taxon OID	3300020463 Open in IMG/M
Scaffold ID	Ga0211676_10049752 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020463 Open in IMG/M

Scaffold ID

Ga0211676_10049752 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2983
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2983

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_094
Coordinates	Lat. (^o)	-32.7806	Long. (^o)	-87.0917	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_094

Coordinates

Lat. (^o)

-32.7806

Long. (^o)

-87.0917

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F021206	Metagenome	220	Y
F049285	Metagenome	147	N
F058518	Metagenome	135	Y
F062259	Metagenome	131	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_100497521	F062259	GGAG	MKTEKELDIEVREAFDRAIDAIMFDYMYMGTEKGRDDLEYMGFKHIETREYIKIPKCGVAFRKKKETENA
Ga0211676_1004975210	F021206	GGAG	MTTVTLNQLLEMENVLATRKIPSDIASMTKAKRYSESKQKVITLGEQPLHYVLRILAKEGLEK
Ga0211676_100497522	F049285	AGAAGG	MKLIKVRVNRTIEYEVSVGVDNDHRYEQVKDYLQTIDWDREIGISPQNYKQISDYYDWIDWETPEDVGYDWKWETDNED
Ga0211676_100497526	F058518	GAGG	MKYKEIVIAAEDLECDQIDTIHDAIKEHILDIGVATPTTLTGFTWRLDVRMRMDNYDT
Ga0211676_100497527	F096197	AGGA	MTNFTKEQLKTLRNEINSLLVTHDFEKTCNLKIQTLVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILHRLDTSKVHEYIDHKSVRYRMQLVGYKNKARKMPWIVKDCLSMSGNEYKLTDAQARLWFEYEVQP
Ga0211676_100497529	F010471	AGAAGG	MIQLTLATNNEAHPEYSDNQIAQALGLLPLWVAEHVGNDDDTDIVQFMTDRYGCGRLYKFEGTINEKGDYVSSYEEDPDLPYMGRMITKDGYAYFYDHAIVALPQPDGTHFITRMD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211676_10049752

Overview

Ecosystem & Geography

Associated Families

Sequences