Scaffold Ga0211676_10013449

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10013449
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6849
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017578	Metagenome / Metatranscriptome	240	Y
F019251	Metagenome / Metatranscriptome	231	Y
F054027	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1001344914	F054027	AGG	MARISNTKGLKQVGGSQFELIMAAAGRARSYSADNQPLTPHFNKRGMTALREIEQGLISTEDNKEMMINKYRRHIPKTAEADPILDN
Ga0211676_1001344915	F019251	AGGAG	MDRDTKYKKVGDKHYVEFYEDNSMIGVIDYSDHSMHYVEDAVENFRSGLMTKETIERYNINGKNQ
Ga0211676_100134497	F017578	AGG	MQALNQITGAIEDIEKIMNEHLKDYIKVFRHYTPYDPKEWTDLLKQVHRDFGRPAERWCWQLDHKWQRSMMEDPEWRGVAVNEWHVIFYFKEEYDAVMFGLKY