Scaffold Ga0211676_10006931

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10006931
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10218
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (96.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F009070	Metagenome	323	Y
F015102	Metagenome / Metatranscriptome	257	Y
F018289	Metagenome	236	Y
F027536	Metagenome	194	Y
F052260	Metagenome / Metatranscriptome	143	N
F061779	Metagenome	131	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000693111	F006217	AGGA	MIDLLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKVKKGKC
Ga0211676_1000693112	F103094	AGGAG	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRSVTLSH
Ga0211676_1000693113	F005813	GAGG	MKLYKNSNGVWAGTQADARKYCGKVYSTVDVPTDKPNLLAFLNLNQVGSLASSPTLEEVRTGEPTTSAMSWFRWSYDCMCRGQYEDAKEHLAKALEMSRKEKTDEE
Ga0211676_1000693118	F061779	GGAGG	MMPDEMEAEKNRKMILAQADEIDILKRNVRQLQGQYQSALIHNKRLIEQNAEAMVIIGHLQQEKDAKEEV
Ga0211676_1000693120	F004493	GAGG	MQTSVTKNNALDFTNDEWNQLIEGNGLLLMWFIEWNKGDRQDANILEFFTRQYNQSAGCDPWPMKDAKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHTIVRMD
Ga0211676_1000693121	F018289	AGGAGG	MADFTRKQLNTLRKQMQNALNMFADKTDIQIEVGNCSYRGGEATFKVKVLMEGAKTREQQDLEFYAELHKLDLTKIAKLMGEDMSLVGYKSRARKKPWVLQRLRDGAEFVADTNLIEKFFKKSEEIRDQPIHVEKARV
Ga0211676_1000693122	F052260	AGGAGG	MFVILATKPLNDGTKGFRFNFLGKKGIVRRRKLQSNGIKFVKGDCMNAYHIGKTTVYTERSTNTTTGRKFRHVAG
Ga0211676_100069313	F009070	AGGAG	MRLAVVIDVDGDIMYVPEGKVFPNFPAPKVFDSIADAEEERDKWNTGIIVDLDNNNKTVPIVRSFDEEERRRSIEREEMNKDDGTSTSKDATQ
Ga0211676_100069317	F015102	GGA	MESEDGKNPNTPFDDATHWVGNLPRKDTDSTKRSTKRRSWWQTQSDILRKKLGMETKRKD
Ga0211676_100069319	F027536	GGAGG	MTVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDDEARLLEQEQKLYEQDKQEGVLWVPNF