Scaffold Ga0211676_10006770

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10006770
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10352
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000681	Metagenome / Metatranscriptome	939	Y
F000724	Metagenome / Metatranscriptome	919	Y
F000896	Metagenome / Metatranscriptome	845	Y
F003326	Metagenome / Metatranscriptome	494	Y
F006271	Metagenome / Metatranscriptome	377	Y
F029115	Metagenome / Metatranscriptome	189	N
F037814	Metagenome / Metatranscriptome	167	N
F065936	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000677010	F037814	AGGAGG	MHIEISLGISIFMLLVIIVSFGFALKELKECQKIIKKMQRRSRKYMREVVSND
Ga0211676_1000677011	F029115	AGGAG	MLDKIEKQIIDFTRLTGLAERITMSHGTLYVTLNQPEQCDHFHKVIRTFYVDNINQDGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSDEKYSGKEIMDNTEMGIWSEFAEEELLNNIPADVDTMLDLENDAKEGR
Ga0211676_1000677012	F000302	GGAGG	MVAVMSQDTKDRIAEMERQKIELENQLELLGYSGNLVKMHQIEEEIYEIEDTIRKLLP
Ga0211676_1000677014	F000896	GGAG	MTNKINLVINLSILALLIYLSVAVKQIQDKVFTDPGIMQPAIGYDQSVEMKYNIQTLLNNILIEAINKQENE
Ga0211676_1000677018	F000724	AGGAGG	MPKKEKIWIMGNKGPTGPWVWNVWTKGSKKPLRMVAFDHQHIQDQLEGRQMVKAVKQPEEKDEFSSMPLGPKGSLINRPADYDRGFKILREWIDENGGPPEEIRIKLRELYIDYDRAERKTTRYSARKKKKY
Ga0211676_100067702	F006271	N/A	MMFYGNTPRDIMKMMWRRRFKLLATVMVIAIAVMLMGCTVAGKKVNPPLMVLDKFWDTLGSGVDNTKSKDE
Ga0211676_1000677021	F000681	AGGAG	MYKRDDYYYSVISTEDLYKELNTNYTGETDLVQSLMSRAISNGWVETRHELGVANEELWSLNDWPEGEGFGSSDHYDYDRRIQESIAFERKFIQAETELVQINKLEESPKNDTVRAYMKMNDKLKEGMVA
Ga0211676_1000677023	F003326	N/A	MATVKEKKKLIRTIRNPIRYFRLVFSRYGGEVAMGTITKDQYEYWSDNDGFEEYMGQVDFDADDANKEIPKRAQFDQPFYEYSNICHFSGPEWDDSQTMYIEEVDKDGKPMDDGDGGYVKDIQHDFGDLESLGALIKCTEEHHPNSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEMVNADGFKVFNEVEYDGEVYYLEEDSTGKSSSFYVAKGENV
Ga0211676_100067704	F065936	AGGAG	MATFTLETGLGMLLAGLVVMGIAGTIIYLTVNAMEDHKIKQEKREREKIDGLN