Scaffold Ga0211676_10005314

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10005314
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11938
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F029449	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000531412	F029449	AGAAG	VATNRPIIPGVPTPSDPKCALTFCGRIIAQVNCITYIMQGTTACIDIQFFGKDDKPLDLDQFCDIHLQLFNELECVVANFWWPTIPSGSKGFLIDILQYKDAKGKIHNKGIIRICLSAACTKTTPGGLFAEILLTECASGNTGDPTGVGPTGSFPTGTQEIYGIPCLQVGTILESRIHKNGGTTGCN
Ga0211676_1000531413	F002033	N/A	MKFQNWMSKWGTTVILVLVLLSYFKSCSVDSEVERIKKEQRILTNEIDTLSSQIINEEEMIFLIKTVPAWKTLRIEEISDKERISINALEEKED