Scaffold Ga0211676

Basic Information
Taxon OID	3300020463 Open in IMG/M
Scaffold ID	Ga0211676_10003417 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020463 Open in IMG/M

Scaffold ID

Ga0211676_10003417 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15506
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (11.76%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15506

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (11.76%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_094
Coordinates	Lat. (^o)	-32.7806	Long. (^o)	-87.0917	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_094

Coordinates

Lat. (^o)

-32.7806

Long. (^o)

-87.0917

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F059985	Metagenome / Metatranscriptome	133	N
F067802	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000341716	F067802	N/A	MLKEIYSRDAAAPKFNVNTIEVSDELSQLILKIENVLFTRKGDVLGAPEMGCNLDDLIFSLVFNEGVIAEKIMTQISGYCLNGLSARFGVNVEVEFYTTPERDGCIVDIFINEERVLGAL
Ga0211676_100034173	F059985	N/A	MVKIVLEPARNGLIKKVINDNHGGSKEQWTSTDVFEATDDSPNKYEYIMRFFFDLCDDLGLEVGNKFDQKVVKMNVEWGSHYEPTAKDVENKIKELQAEIDLLKEWKKP
Ga0211676_100034174	F008190	N/A	MEETLEFNFVYSKDAVTIKTFLGSVPRNIECINYMDIFNKLTKNDYFQLEPSDAVVSSYLMRQLQTALGRTTTSTVFYVLGSLDKPTITGVKSYVESLTIKDITYKIYATPDINVNGTASLFDDIVEFG
Ga0211676_100034175	F004606	GAG	MKTHRIFNKGQIIYCLLSSFSQPNVLLPVKGIIMDTAWDTVNPRYKVRIVKMYDNMKFLKEHFFDMNFKYEFDNRARKLPLKKEDFKNVKSLEERFDEKDRDRFFVIVESVMCTKTKQDLQKLFEKVQFYIISKNLKEIKETSSRPFYKGVLSVDSGNEFDVRFKKGWSDKFKGTDIDIQKYLSSLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211676_10003417

Overview

Ecosystem & Geography

Associated Families

Sequences