NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10003417

Scaffold Ga0211676_10003417


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10003417 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15506
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F059985Metagenome / Metatranscriptome133N
F067802Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0211676_1000341716F067802N/AMLKEIYSRDAAAPKFNVNTIEVSDELSQLILKIENVLFTRKGDVLGAPEMGCNLDDLIFSLVFNEGVIAEKIMTQISGYCLNGLSARFGVNVEVEFYTTPERDGCIVDIFINEERVLGAL
Ga0211676_100034173F059985N/AMVKIVLEPARNGLIKKVINDNHGGSKEQWTSTDVFEATDDSPNKYEYIMRFFFDLCDDLGLEVGNKFDQKVVKMNVEWGSHYEPTAKDVENKIKELQAEIDLLKEWKKP
Ga0211676_100034174F008190N/AMEETLEFNFVYSKDAVTIKTFLGSVPRNIECINYMDIFNKLTKNDYFQLEPSDAVVSSYLMRQLQTALGRTTTSTVFYVLGSLDKPTITGVKSYVESLTIKDITYKIYATPDINVNGTASLFDDIVEFG
Ga0211676_100034175F004606GAGMKTHRIFNKGQIIYCLLSSFSQPNVLLPVKGIIMDTAWDTVNPRYKVRIVKMYDNMKFLKEHFFDMNFKYEFDNRARKLPLKKEDFKNVKSLEERFDEKDRDRFFVIVESVMCTKTKQDLQKLFEKVQFYIISKNLKEIKETSSRPFYKGVLSVDSGNEFDVRFKKGWSDKFKGTDIDIQKYLSSLS

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