Scaffold Ga0211676_10001881

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10001881
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21688
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042623	Metagenome / Metatranscriptome	158	N
F051535	Metagenome / Metatranscriptome	144	N
F079321	Metagenome / Metatranscriptome	116	N
F098202	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000188111	F098202	GAGG	VQNEQVKLTTTDNVMVFITAIFLYIHVKQLLVSGSSFMLSALLGVWISMTIFDMYGRWRLKTRD
Ga0211676_1000188117	F051535	N/A	MHLKKHSMKIDFYLKWTATSILIVGCFINSAFPDWYPVGPILLSVGGVVWLIVSCMWREWSLIVTNSVMTAVGLIGMAYYYLS
Ga0211676_1000188128	F079321	GGAG	MLKKLAVIGLTTALIGCGTSNRALADASIFTQQNPIDYTKIFNERTAIMGILHFMKEKPYVAPVNNQPVFFNHTKQDAKLDAVLSQFPHNAFDVYIKSPTYPNKNRRTYMKLDFTVGWNDGYLNKLYTTVASMNTRQGAGFAKFINKKHWTTPGYDVQLDMTASNKLMRGLYRAGPQLLVRVGNRSLGCYNVPELSGLTQGRMAKHKMVQPNGNGTIINGWLEFTTSIQFEITPDDDIGNVRIFVVNQSQCR
Ga0211676_100018817	F042623	N/A	MELVEEYTRVIKVEEGYPHAKTLYLPTGEIDAVVDWCKQELSPGWKWQILTSSSPTTPGAYAFFFNADSDFFAFLLKFG