Scaffold Ga0211676_10001417

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10001417
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25180
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (40.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001724	Metagenome / Metatranscriptome	645	Y
F039590	Metagenome	163	Y
F046318	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000141711	F001724	N/A	MESAKKQNQEQISKDLDDDKPDYQEKIMFLVSTTAQGAILTWCLIVLSLGYIKLPNKLFGMDIPDQPRVDSTFAAGLLGNILAGWGVSVGAATGAKKKKKEQGEAANNTNLSGQQVIVIKQPLEIIAPKPEVSKS
Ga0211676_1000141735	F046318	AGGAGG	MNYKQRFKDMPIDSSWFNEEDRERFIKELSDLAFGENTIERGYSMEEVVEQLKEFSDNALKYEEGEE
Ga0211676_1000141737	F039590	AGGAGG	MIKQIEVTLLVEVDTEDEFTCPSGNPLLENCVLNVLDDGFFTDPVKLLKVKEVEEDG