Scaffold Ga0211676

Basic Information
Taxon OID	3300020463 Open in IMG/M
Scaffold ID	Ga0211676_10001237 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020463 Open in IMG/M

Scaffold ID

Ga0211676_10001237 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27215
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	64 (84.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

27215

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

64 (84.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_094
Coordinates	Lat. (^o)	-32.7806	Long. (^o)	-87.0917	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_094

Coordinates

Lat. (^o)

-32.7806

Long. (^o)

-87.0917

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F004327	Metagenome / Metatranscriptome	443	Y
F007226	Metagenome / Metatranscriptome	355	Y
F011629	Metagenome / Metatranscriptome	289	N
F036692	Metagenome	169	Y
F095622	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_100012371	F003769	N/A	MQQLKTITVKTSNKVESVHMETLYKVIENCYESLQIMEADCTSASYFVNSANIFAQLQMLYLENETNNYVSLQSVMEIFANNITYYDEKYSLFTSVVENTAMQNVNLENYTYLSN
Ga0211676_1000123728	F004327	AGGAG	MRQYIKIGTKVSTRWGEAKVTGIELCRNGEKYGIPMEKIWADHKDDSVFDLDNGHWSYGYQLEVV
Ga0211676_100012374	F011629	N/A	MNIAHARKLLKLYKQHKGKNMLNTDEVKDLVRTRFGGSLKQVYLNKCYVNYKEIADKRNMAFAVDGDVYKGVDFTALAEEIGCKRIKLHAAFLRGMQSGCWLRLQQVQYDK
Ga0211676_100012375	F007226	GAGG	MQKLLNKITYYFLKRAYVQMWKSDNLQNADKIAEHEEDYYKYFVR
Ga0211676_100012376	F095622	GAGG	MQYNTTHVQLAKTFLANKNVEVYSELTDEQGELGICVDVNNNRIWTDGNRGLWSTVAKGVKVRHANFLVTKWDDEEWSGGLAGNVHYDGSGEDGTWFDGGDVETALINKTKDKESDGMIYTDTAFLVNLQKYMVESCDFDLQLCEYLDFDYSEQGMQDDENVNLDVEMDGDFWLYVIAEMKREGIAHRRIGEADLIVEAVA
Ga0211676_100012377	F036692	GGAGG	MQNVHVLQLQGTGDDEYAWENAGVFTTKLLALDKLAKINAEYEDADMFVFTLMDGTARIEEHTIDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211676_10001237

Overview

Ecosystem & Geography

Associated Families

Sequences