Scaffold Ga0211676_10000993

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10000993
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30242
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (92.98%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039870	Metagenome	163	Y
F049595	Metagenome / Metatranscriptome	146	N
F086304	Metagenome / Metatranscriptome	111	Y
F099995	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000099347	F049595	AGGAGG	MEQVDYRFEDHGSIWLCEPLTGCARDNLDKGCSGEFHIRWGNALVVEPRFVNDVAKQLTDEGWVVE
Ga0211676_1000099349	F099995	AGGAG	MAFLYKGTDDWSGVKWCVRTVYWHDSYGLNDMLVYGGDYNPYEKPENPLIEFYDMDSLVANTETGDEGHDERIKERGQFVSRYYLDTLNGTDRGTHASAPQFEDNWANGLNLHGGEERWSISGEFYTKAMQAVNADFNEWKENWMLEHDSE
Ga0211676_1000099353	F039870	GGAGG	MPMFKVNVTVYHAFYDIEASSEEEAKELAASDYIWDDHIMDVIIDVEEVDDDNS
Ga0211676_1000099354	F086304	AGGAGG	MIILELNRVCKSSGRDEGKILLTGNTFAVTSEYHRWGKFERDICVVNNGTSNNGGYWVSDSYGNIVSVIEEQTGRC