Scaffold Ga0211676_10000306

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10000306
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51854
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (69.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011932	Metagenome / Metatranscriptome	285	N
F014251	Metagenome	264	Y
F018641	Metagenome / Metatranscriptome	234	N
F062248	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000030623	F018641	AGGA	MFEKDKIYSLRLSDSSEIICKIVSSDDNKTVISNPFSLLPTQNGVQLLPAMMSADFAKNVTINTNNITLTCETSMDVHATYIQAVTGIVTPKKTILTG
Ga0211676_1000030632	F011932	GAG	MRILEFTSRSDKPSAQQLTALAEYLLGRADDEATEHTVPIDVFLSMAHNMGVNITDQQLRTLATQDPLKNIIQNVDADNIVLVGAGITGEEGADTMTPDQAQDTVAGMADAANPLT
Ga0211676_1000030634	F014251	AGGA	MASDNLRSRVTEKASRLLNKIADELLNSNPNAIFRNGDSIMAFADYEIVKESQDEYSVYKDDMLMTSCATCRIALSYCILDKNKMLTDAKNLVVLEDKILGRQNEMMHYRHVASSSKVDEFRREVVLHRLTSAKAEYQMLQKQLTKSINVAKYCQQKGFDNEII
Ga0211676_1000030647	F062248	N/A	MIIEIENFLPNVLVDQLVTFAETNQDWQLQEMQEHLPRKKISWLLDSPIETIHNWFDNLPLFEHLDFMGVTLWKDDVDFKMSQHLDNDRVRVAVQVYLDNRKSPGTQFGDRTIEYGRNRGYIMYNNSTMIHGVPDQTPHEGRLSIYALYQ