Scaffold Ga0211676

Basic Information
Taxon OID	3300020463 Open in IMG/M
Scaffold ID	Ga0211676_10000244 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020463 Open in IMG/M

Scaffold ID

Ga0211676_10000244 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	57616
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	69 (81.18%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

57616

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

69 (81.18%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_094
Coordinates	Lat. (^o)	-32.7806	Long. (^o)	-87.0917	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_094

Coordinates

Lat. (^o)

-32.7806

Long. (^o)

-87.0917

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004327	Metagenome / Metatranscriptome	443	Y
F012734	Metagenome / Metatranscriptome	278	Y
F036692	Metagenome	169	Y
F066687	Metagenome / Metatranscriptome	126	N
F072353	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_100002441	F036692	GAGG	MQNTVYVLQLQGTGDDEYAFENAGVFTTELLALEKLANINAEYEDADMLVFTLQDENARIETHTINA
Ga0211676_1000024427	F066687	GGA	MIKIVDDVFPKWLLTTIQQSISNCKQWEYGRIKSAYEDEYENYYNCMLWHKNYPEMEDPLKGLSNVMASCFALELLPGGPKQLEVLRLNGTTPASKQYPHRDCDMIADDTERLQSIVWWPFGSDGDLRFWEQQVDIVNPSRTVEYKPNRAVIFDSSIPHAGNPPSDWPMRVSINSVWKLS
Ga0211676_100002443	F012734	GAGG	MTRQIKQIEYGYWWNCGACGTENAYGLDEAEAEEYIKDFEINNAEEVAEGETGEGACDWNYNVIAEENDAHIEDKEKCWKCDAVATADTRTDKAKFLDALIDNIVQK
Ga0211676_1000024444	F072353	GAG	MFSIFNKPSKITLDCFTDQRVIYDAYEPELAKDTMPEWWKKMVSTRKFDSMTYQGLDNATLKRCPHVNELLTTGVMFPAWMQLKIKTFDQPDQAMIQTYPEGSPVIPHDPQDYAHHKPNMFHGKVMSPWQIRDTSGTKWLWTSPQWHMTNPIEYWTVPAISEFKYQHATIVNLMVPFNSELNIEPGDPWLHLVPLTEKRIELKTHLVSSEELNKMNSLMMGVGSYSRFINRMKKKGK
Ga0211676_100002448	F004327	GAGG	MNRTYIKIGTKVDTKWGEAKVTGIELCKAGEKYGIGMDKIFVEDKDRCTFDMDNGHWSYGYQIEVAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211676_10000244

Overview

Ecosystem & Geography

Associated Families

Sequences