Scaffold Ga0211676_10000236

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10000236
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58852
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (59.78%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F003770	Metagenome	469	Y
F008885	Metagenome / Metatranscriptome	326	Y
F009890	Metagenome / Metatranscriptome	311	Y
F010001	Metagenome / Metatranscriptome	310	Y
F016994	Metagenome / Metatranscriptome	243	N
F020386	Metagenome / Metatranscriptome	224	Y
F020625	Metagenome / Metatranscriptome	223	Y
F022908	Metagenome / Metatranscriptome	212	Y
F024812	Metagenome / Metatranscriptome	204	Y
F073442	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000023628	F010001	GAG	MQDKANNVTLLKAQIGNLEVQVKDYQQIVQELTDKLKLYEQKHGTVFRQSRNISNQK
Ga0211676_1000023629	F000464	N/A	MTFKGQHKIRMYSHHDHDLDAEEEFWPIMGILFAIIGVWTGIVHMIDSATLDVIPWWVEPFTIAPLVFLLIMKENYDSLNPLHWWPMFWGYNAKLPEDDRITIRPLDVERIMHQHGGPINVHIIDYEHIKFRRKKDAVIFGLRYF
Ga0211676_1000023632	F073442	AGG	MQRNFILTDVMKTGNHQELESYISMHSMAGQSFDMTGEYYTLHEYDLDSYDRRFAMIDTRSDNDRLKDNAEFMTELHRRVDLLKSQGFVFIKANPWESLQNINEHPEYMWPKIDVDHIKWTGGTTWFWHHMYNRHNGKTFNFDHSYKKYDFLYLNKTQRDHREKLYTELSNKGILENSLYTNWPDRKLPADYELPWAQDYPQYGMDQDIYEKPYNDTACSIVSETNDNNNEIFMTEKIWKPILAQHVFVVHGNHLYLQKLREMGFRTFNNYFEEAYDLDRDPNMRINTIVDVCDRLRDAPWQDIYSLTKALRKHNHDTMFNKEKLSLEINKHLDLFLEFADTSQVSS
Ga0211676_1000023637	F016994	AGGAGG	MAISENNTTFVAGNEEFMGKQLEFITIDAGEELANHLLKNETLNTIENTVRVYGNIVGAGPLFDTNASKTYIVEGTDMFVGAPASAGGAFTFTESGADGSSVGTLLAALKALGTVDGIDLNDSGTTAKIENLEI
Ga0211676_1000023638	F020386	AGGAG	MPISRNNFTSLPVAAEQEGVDVSFFTVDFINAMNSETGDPQADSTAAGLALVEQAIANQGINILATGPLGNSNTELTYMVRADSLDVANHITANGLRDAIRAVDTAGRAASATPRNTANFSAATVTAKDLAIAV
Ga0211676_1000023639	F024812	AGGAGG	MPITKNNFTHVTNTELEGVETSTFIVDFVNAMNAETGDLSSGSATAGLEATRAVISQFINILAEGPLHESNKQKTYVVRTDSLGTLISGGTLQTAIRALNGAGNVTATISSATVTATDLAIDTANAV
Ga0211676_1000023640	F022908	GAG	MPTHLDEAIKVILSADSKLRDKTPRIYAMPKQEHMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYNPEIILQEPPFDKHEDQSEIFTFIRKPDERWWSGIKDMFYFMPWYTWWTNEQIMQQWPHFTRSTLRLHDVMEEVKPQHLIKCDDGLNDRVIKFAKEHGLLCYGNIPHEKALRHTKPDIKKLEDNGVRELKAWIRQNPDRQKQLDEYLEPDWQYWEQVEYQD
Ga0211676_1000023663	F020625	N/A	MSNKLCYYICKVTKAVPDSVNFFEDEEEYGYGLPWKDVLAEVEKHYRDGADAVELEMITEEQFNDRLPKPC
Ga0211676_1000023678	F009890	AGG	MQNHLRNVRALMENAKNFDVTRKIDTYEYESLEKLILDDDVRYSEIMEIFTDKDYRDWFHERNFKGKEYNITKFHEL
Ga0211676_1000023684	F008885	AGGA	MATVIPKYNRIVQDQPQQAFYMVSINTSGFLDTETNNGGRISPCVAEDFATAPTTLAQSRLVSRGALRFKKMLELLQVRSNVSVRNLLTTYGSDAGDQPITKLQFGLVYDNDNFLPTTGTAGDGSTATTTKVGFIKDKITEALYGTFTERMQVFNPTAGAGLILNEEITAGPVLLVSQDDILDAVTVTEALDTATMVSGFRPTLASELPTDNADNDTAE
Ga0211676_1000023685	F003770	N/A	MFKMFAVICAVTVLECNTMHEDPPRFFDTKAECEKALVLKKQQTLEMFTDEDGYLTVAHLELGCTHAYD