Scaffold Ga0211676

Basic Information
Taxon OID	3300020463 Open in IMG/M
Scaffold ID	Ga0211676_10000029 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020463 Open in IMG/M

Scaffold ID

Ga0211676_10000029 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	156383
Total Scaffold Genes	178 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	143 (80.34%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

156383

Total Scaffold Genes

178 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

143 (80.34%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_094
Coordinates	Lat. (^o)	-32.7806	Long. (^o)	-87.0917	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_094

Coordinates

Lat. (^o)

-32.7806

Long. (^o)

-87.0917

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013640	Metagenome / Metatranscriptome	269	Y
F036713	Metagenome / Metatranscriptome	169	Y
F042922	Metagenome / Metatranscriptome	157	N
F048351	Metagenome / Metatranscriptome	148	Y
F094969	Metagenome / Metatranscriptome	105	N
F097028	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_10000029129	F042922	AGG	MASRANIYIDKGLDFRTELNLFNDEGVEYDDATISVYNFYSSIRKVYSSTAATNFTIEVANNDITLVLTDQQTDLLAPGKYQYDVVMEKQTGELTKIVEGLAIVVDTITEVS
Ga0211676_10000029134	F048351	AGG	MSNIKRDQKSRAVLSTDAVALDKYKLERNYYRKVDRICNDLVDIKRSIIEIYERIEKLEN
Ga0211676_10000029145	F013640	AGGA	MAVDNIILAPESFRTIYLRREDRVIMRTERGQKIIIKRIIPDDWTPYRIYEHEQLINNNKKEIFLFDNAFLNQLTNEFKQSVSTD
Ga0211676_10000029173	F094969	AGGAG	MSNVILPSSDEDKKRIRGCMEEMSNSFTRMESERDFQKEAINSLAEEVQIPKSILRKTARAFHNQNVSDLVAEVSDIEALMETI
Ga0211676_10000029175	F097028	GGA	MNNLTKLLNEAMSLHRDGKLCGTDDLYKSLVGSIGESQIVSLTEGESVNGKFDVLGKTRYPGRIEVKTANKPTEGKLGAWSLMCKRSGCDWFALVDASSLEENKYRISMIPHDDMFAFLDTPNSKGNCPDNIRWSASYNSTDSKCVEATELFLKYEIDY
Ga0211676_1000002959	F036713	AGGA	MKKIRYIISDDNMGVFLGTYNGYDLGMEEDGRIYACFAANNPFGLTTACSFKTERAARQYMIDMFPQKKMKNLITKVVETESEFPTVVDIIKSGHGEDCFDMIDGLVAEGSQVIH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211676_10000029

Overview

Ecosystem & Geography

Associated Families

Sequences