NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211546_10073137

Scaffold Ga0211546_10073137


Overview

Basic Information
Taxon OID3300020462 Open in IMG/M
Scaffold IDGa0211546_10073137 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1673
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_151
CoordinatesLat. (o)36.2108Long. (o)-28.7989Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066124Metagenome127N
F069327Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0211546_100731373F066124GGAGGMGRWDEYDGSDAELLADFRNLQIRLLHQKDRRKNALGKEAIEKVDSEIKELYQEMKELYERNHERFQHSEFMRKVKGFECFAWFLMLSAETRSRFR
Ga0211546_100731375F069327GGAGGMERWDRREKSIDEESVEEIIEDFKVAKAEMRSYQYKKEKFLIGLDLISEGKRIDNELDFWEKRLEEICRENYKLLKSKGKNVDEVMNFFSEKTKEAVK

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