Scaffold Ga0211546_10041775

Overview

Basic Information

• Taxon OID: 3300020462
• Scaffold ID: Ga0211546_10041775
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2247
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.2108
  • Long. (^o): -28.7989
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040347	Metagenome / Metatranscriptome	162	N
F047902	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211546_100417751	F040347	GGAG	MNRWDITVKQSNYDFNPFRESDHGKYFKTITNIYEDWSKELEYANKQQYDFYWPSPVKPGGDHFDYEYENKLVEDWGIPKDFVIYRMWTATKKECPILCGLADKLGLEDAQVNIQTQTTGMMLHLHIDSLTGLRKERQDQSSSRATDPEWGRVFVMLEDWKPGHIIQF
Ga0211546_100417754	F047902	N/A	WNIRGDALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADILCSQADFKPANDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVNTLAGHVGLKINKVDYDHCNLYRPPMYRIFTEMTHG