Scaffold Ga0211546_10025030

Overview

Basic Information

• Taxon OID: 3300020462
• Scaffold ID: Ga0211546_10025030
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2953
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.2108
  • Long. (^o): -28.7989
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008236	Metagenome / Metatranscriptome	336	Y
F019643	Metagenome / Metatranscriptome	228	Y
F060890	Metagenome	132	Y
F065685	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211546_100250301	F008236	N/A	WCDSDEKIATKRPRGKKKADQWRSDLPKLVVLGDDKYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0211546_100250302	F019643	AGGAG	MAKYYIKSGTLELIFSTDKEPYDACRRVIHECNSDDELDEYMYLDERGYRDYTSADTTTFVVDSEQILRKEGYIK
Ga0211546_100250303	F060890	AGGA	MNNSMKLTKHDYEMIADIVDSYYEETVALQRDHYLDDDTDYFKKLEYLEELIDKVVYMVGVLSAEEG
Ga0211546_100250305	F065685	AGGAG	MEPVVGIGSNTKYGRVIKIQSNGVVVENRQGVKETVSFRKIENQLKGK