Scaffold Ga0211546_10003600

Overview

Basic Information

• Taxon OID: 3300020462
• Scaffold ID: Ga0211546_10003600
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8360
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.2108
  • Long. (^o): -28.7989
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010536	Metagenome / Metatranscriptome	302	N
F082620	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211546_1000360013	F010536	AGGAG	MIDVMLSKATEGMLIAELLNRRNEKEVPLFMGKSILLPNGQQQLLAILPNIQVLTTVNQEEE
Ga0211546_1000360014	F082620	AGAAG	MLFNEMDYNDRVKDGVGKQAEDIFEQHLTDLGLVKQKDWLKAATSPWEHSIDFFWYYTDIITIPDYIFNRRDKLFLTEVKGTKKIKFSDMDKLQEMYDRAKDYPEVKVGLTYVNRKTKEVKWYSFEEVLQMWDSIEEYETYHEKDFKGQEKKFKTLPL