Scaffold Ga0211546_10001215

Overview

Basic Information

• Taxon OID: 3300020462
• Scaffold ID: Ga0211546_10001215
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14305
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.2108
  • Long. (^o): -28.7989
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093730	Metagenome	106	Y
F103089	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211546_1000121522	F093730	GGAG	MVFVKCGNDGRWRLWIRSVAGESPAGLRLNRGGMFPYETLYDHQDYAQATIQAGRLQEYIDDRQRALTVNRKKKHKWN
Ga0211546_100012158	F103089	N/A	MPNQRNPNKKQLTVWRHERDMDVLREVSKRNDISMSELLEILIEDFQDKNKSEQNKYLKTKRK