Scaffold Ga0211486_10350722

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211486_10350722

Scaffold Ga0211486_10350722

Overview

Basic Information
Taxon OID	3300020460 Open in IMG/M
Scaffold ID	Ga0211486_10350722 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	634
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_032
Coordinates	Lat. (^o)	23.4217	Long. (^o)	37.2517	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004770	Metagenome	424	Y
F082551	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211486_103507222	F082551	AGGAGG	MSKSYTIWIDVSGDNYKTSKSFGSRDYVAMDIRVGSSKTNSHDLARVSVHWNEDEAGNRTFALALDGLCMRSGVMTADKKFYHRDPKKASA
Ga0211486_103507223	F004770	N/A	IEWRKKEEPELGPEFVVRTALKAAGYTVGHIAVQGVWDEDKPARPQGPWDENRLPHEEVA

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