Scaffold Ga0211486_10143441

Overview

Basic Information

• Taxon OID: 3300020460
• Scaffold ID: Ga0211486_10143441
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1055
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4217
  • Long. (^o): 37.2517
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007584	Metagenome / Metatranscriptome	348	Y
F024547	Metagenome / Metatranscriptome	205	Y
F066698	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211486_101434411	F024547	AGGA	METQKDNKDYTRRNRFSGESIELTKEEAEKHDKIFYHEALATLEDKELGTGAS
Ga0211486_101434412	F066698	N/A	MKHPCQGPHCHRYSTKDRFNKKLKRLKGRNAYHNMDMNGVYSIFCTTGCQNDWISENVQNIVNQRPITFNRERKFSEQTYHITEGGWLRRDEDRVDNE
Ga0211486_101434413	F007584	AGGA	MSETIARLLMVLIGFVVAMLGVIYAMHTDDLYLGILIATGGVTSMYVGLPQ