Scaffold Ga0211486_10127613

Overview

Basic Information

• Taxon OID: 3300020460
• Scaffold ID: Ga0211486_10127613
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1129
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4217
  • Long. (^o): 37.2517
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020817	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211486_101276132	F020817	GAGG	MIYFIIKERHYTNIDNSYDIVASSKDVDIINDKLRGYQLINDDKNDVYSIVRYESPLLLKDEVA