Scaffold Ga0211514_10052699

Overview

Basic Information

• Taxon OID: 3300020459
• Scaffold ID: Ga0211514_10052699
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2080
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006865	Metagenome / Metatranscriptome	363	Y
F013774	Metagenome / Metatranscriptome	268	Y
F037421	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211514_100526992	F006865	N/A	MSKSQRLIKINDTMYECLGTMSVKSSDIKGTEYWKKQWGADQVLRNGNKFYYCRTIIDAEFEDI
Ga0211514_100526993	F037421	AGGAG	MSNKPDHSPYFKELIRKLRELKISADNGEIIVPNDDEDVLAFNDLDLPFSVDDFNNMNTEQKEALFIWLNRDNMPQA
Ga0211514_100526994	F013774	N/A	VNDKLLELQRKKLQQQILYLRTELEETEWIFQDCLKEFDVEFRKYIKEPTEKRKGDVTESPKYDIPATDVNSVFKKIAKETHPDKLINQNISDEEYDAKVDMYKEAQQSVKNRDWSKVVEIAKELGIDISDIKNDDSEYLKESVKRLTQKIKQLKLTYAWKWKHTPDQDREIIRGMILQSLGLEQMKEKENGNS