Scaffold Ga0211514_10023009

Overview

Basic Information

• Taxon OID: 3300020459
• Scaffold ID: Ga0211514_10023009
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3339
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074501	Metagenome / Metatranscriptome	119	N
F081740	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211514_100230093	F074501	AGG	MVFTPTTVDRFEIYKIIFIKKELLMDKKIKVQVPSSSGDYFIDVDLTENQNNFLNKFNQIMDKKLYAIFDALIEEIAATPEYKNINKSELYRLYHDIAGSIWSGAAVDQLLPRFYGKKIKPQNTI
Ga0211514_100230095	F081740	N/A	MDKFDQLYKKYEDLVSDGTFDGDARDKVDTILQMIYDTDDLPSGIYESLKTDEEKEIFLKDFANACDEMMKNPACDTDDDYKAIAEQVKIFR