Scaffold Ga0211514_10001426

Overview

Basic Information

• Taxon OID: 3300020459
• Scaffold ID: Ga0211514_10001426
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14988
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F034894	Metagenome	173	N
F105233	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211514_100014261	F034894	GGAG	MNVTFNLVGGGELNIPARFISGFYKDDMTSDVIVEVLGEEYIVRDSLDEVKYLLGLAS
Ga0211514_1000142619	F105233	N/A	DCFLQSTEIEYNTEGEQPLSYAVLTFLTNYYVQETAPDVAV
Ga0211514_100014264	F001942	N/A	MAKKTIEDHQANSRLGAVGESLVQTFLLEHCDWCYRTQEKHPADLMVELGSAKYTIQVKTRRETKQGKYVFATENSRTLSSVYKHYHCDIHAFVFFNNEGKHIFFKPNNTSQTYFTFESSLITQTLAIDSFKETLDQLSSVPKINPL