Scaffold Ga0211697_10297899

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211697_10297899

Scaffold Ga0211697_10297899

Overview

Basic Information
Taxon OID	3300020458 Open in IMG/M
Scaffold ID	Ga0211697_10297899 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	668
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_076
Coordinates	Lat. (^o)	-20.9724	Long. (^o)	-35.2742	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005649	Metagenome / Metatranscriptome	394	Y
F068129	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211697_102978991	F005649	GAG	MIMMNIKVEKIGAEWYRQMLFNNRVQQRLSMSRNKRLTNLISDNSLDGLEIDWHLANTEMGFDIFVEPILDFQPTYAYA
Ga0211697_102978992	F068129	GGAG	MDLEAILHQLEEAKELKDWDMIEESIESIRALIDDYDEYQSGEDWG

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