NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211697_10106285

Scaffold Ga0211697_10106285


Overview

Basic Information
Taxon OID3300020458 Open in IMG/M
Scaffold IDGa0211697_10106285 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1165
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-20.9724Long. (o)-35.2742Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004843Metagenome421Y
F026028Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0211697_101062852F004843N/AMQKEDKIMKWMFIIVIAVALCLNGCADTADAEDSTATTPAEQQEANEKSASGTAWVAIVMTWNPVVYTIDKEFSSEVNCWNYYDNGAGESKMLNNYGTQVLDHQGNKPDKDYMKKHRPAHRVYPTRMYKNNGGWMVWLTCDIKGRNEGL
Ga0211697_101062854F026028GAGMSICSNCYHRIRHRNKIDVGHWWNNPPDHVYVCSDKCKEEIEKKVVDGTWMIMRPFPKTEKEDDGLPTALTDKQFGTT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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