Scaffold Ga0211697_10088723

Overview

Basic Information

• Taxon OID: 3300020458
• Scaffold ID: Ga0211697_10088723
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1286
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -20.9724
  • Long. (^o): -35.2742
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F015879	Metagenome	251	Y
F060967	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211697_100887231	F060967	GGAG	MNKSRVARDLYRKVFNDNLINLNDSDARKQIMKDFLNDPVNKKAGWKSKDARFFRLAFQKVAKE
Ga0211697_100887233	F005148	GGAG	MKQKKYEEFLIRTLPESEEVECKKCERKYSDEWNLLSLAKLDMCMLCANRNIDKQTIERKYQNVK
Ga0211697_100887235	F015879	GAG	MKKDDVIIMTCDVCGAMSHAIKAHVQEGYYVKDEFVICKICFGELK