Basic Information | |
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Taxon OID | 3300020458 Open in IMG/M |
Scaffold ID | Ga0211697_10061983 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1565 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_076 | |||||||
Coordinates | Lat. (o) | -20.9724 | Long. (o) | -35.2742 | Alt. (m) | Depth (m) | 800 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007004 | Metagenome / Metatranscriptome | 360 | Y |
F009987 | Metagenome / Metatranscriptome | 310 | Y |
F010942 | Metagenome / Metatranscriptome | 297 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211697_100619831 | F010942 | GAGG | MLDQSRESEKQILSLKKDIEHLQYIITKVEKESEFIKKHFTTKNSERLDEIKTIHKRIDQHLQTDLDFHENVRKKISEQFEIINDRIRQLDRWKWATWGALIIIGSLVGYFIPVPRLVGLFN |
Ga0211697_100619832 | F007004 | AGG | MKNLMIGLCLVLFIGCGTSNAYERPTVRIVGEAQMVKLDNGNYEVTPRWIKDRFDAENSMVKQLEDCREGK |
Ga0211697_100619833 | F009987 | GGAGG | MIGAIIGNALGLGLKIMDKMEKNSDKHSFEEFKARKKEMDTSLADADVEGVDSMFEYLAERARGGNTGRKG |
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