Scaffold Ga0211643_10196491

Overview

Basic Information

• Taxon OID: 3300020457
• Scaffold ID: Ga0211643_10196491
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 992
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_110
• Coordinates
  • Lat. (^o): -1.8505
  • Long. (^o): -84.6318
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F029123	Metagenome	189	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211643_101964911	F029123	AGGAG	MSYEVWFGENGKWFGYHSFKYKIDAKRYKERYQKMFKSLTVEIR
Ga0211643_101964912	F006217	AGGA	MIELLLSVIEEPNQIHKYCMEKHDHWTGRAACVQELRHAQRKMEVEELRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKRSKC
Ga0211643_101964913	F103094	GAG	MSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGTKDDRAVTLSH