NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211643_10128729

Scaffold Ga0211643_10128729


Overview

Basic Information
Taxon OID3300020457 Open in IMG/M
Scaffold IDGa0211643_10128729 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1247
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.8505Long. (o)-84.6318Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013153Metagenome274Y
F026586Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0211643_101287291F013153N/AMKKKLLQRWFKFKTKYLDIIVWILMIIIAMFMACDDRIEEPDKSNVIVTMLRIDRIEIMDNLWITPAPIWGHLESEDAPIERMVVHWWSNMYWDEDDSSGHYKLLPNRRNKAIWYDNFGNRDTMDVNVDTLRWTTDEYSVVDSLGYFYN
Ga0211643_101287292F026586N/AMSGCTNSPSGAIEHNTTIYYLDNKFHEDIPEEYIFKTWGYRIADPFGREHTYRSKVDIPHQRKETKWCTIHRQHEEIKAHFDPKGNGYIYWISRHKKSL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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