Scaffold Ga0211643_10107877

Overview

Basic Information

• Taxon OID: 3300020457
• Scaffold ID: Ga0211643_10107877
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1374
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_110
• Coordinates
  • Lat. (^o): -1.8505
  • Long. (^o): -84.6318
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F004650	Metagenome	429	Y
F013522	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211643_101078771	F004650	GAGG	LVYRLNSINAELDGDTIQYDNGESIWLVSYLAMYDWDNPAPNSTEDAFKIGKVVKEYCITTEEIEEERRLMNG
Ga0211643_101078773	F002249	N/A	MKYKSYPYTVPINHKALQHTRIKELQVRMMKWVSWYKDEKIRNRTFDKDKWQHRFQFTLRCQERAGKLTKGELQQLNHYWKVYEEGNYT
Ga0211643_101078774	F013522	GGA	MKKETILERIEQLSKLCEETEPTFNELMNMDKLFSQDLISVDNMYLQVEQDEYSPNDLIDIMKECNWIWKKRHKIKEVGWEKYDRIDRRIEESLKAGRKIEAIKTYRKHKIDNGGDCGLK