Basic Information | |
---|---|
Taxon OID | 3300020457 Open in IMG/M |
Scaffold ID | Ga0211643_10061218 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1868 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | TARA_110 | |||||||
Coordinates | Lat. (o) | -1.8505 | Long. (o) | -84.6318 | Alt. (m) | Depth (m) | 50 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F043609 | Metagenome / Metatranscriptome | 156 | N |
F075318 | Metagenome | 119 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211643_100612181 | F075318 | N/A | QINGVTRQYGCMGAIDFETPRQSLTFIKKMRELGYILEDGSENVSTAVFCLPYIFKDHTEFEEAIKCTITDI |
Ga0211643_100612183 | F043609 | GGA | MRTDNQEFHNILKSVDFADISDFWSVPYKEILEEVKDIPENKWRKPFDADYKREGLNDLESNIYYPGSKGDLIPARGWRSVTALNETGDYRDQISKFTPVFNTENEYRNKVKEVREKSQWTDISHYLPTLQKFFEDKIFPYMYVGHIYVSALDAGGIVTEHNDIPDDSRPMLESDRVHSFNVLNTFNLVLNHVKSCYSCFNGKILPAYDGAIRWTNTGKQHWVVNMNKESQYQIIWQGLYKKSFRKLVKEKYKYSYGNNRQS |
⦗Top⦘ |