NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211643_10026569

Scaffold Ga0211643_10026569


Overview

Basic Information
Taxon OID3300020457 Open in IMG/M
Scaffold IDGa0211643_10026569 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2947
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.8505Long. (o)-84.6318Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015796Metagenome / Metatranscriptome252N
F084709Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211643_100265696F015796GAGGMNKYQMKKYDDTKDRVLIREWFKLKGIVLEHGSKYGVDLEGKDYDIEISHLSFSNLWEQWKKENRFRIEIRKRNHYWDGIYNESKTTHFVQLNKSGHELLVYPQDLIMEYSNNEVELDYLKHKGFNLKERTFMSIPFEVGKDKIKRYNI
Ga0211643_100265699F084709GAGVGSKNKVKYNVGGVIVETDGSYEHKFRVLRMAMDNWSKKNRNLPIDSPEGRQYGKDVDRYNKLKELFKYYAPNFLNKSKWFIKKKHMIEVNELYRRYNV
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Institute for Fundamental Biomedical Research
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