Scaffold Ga0211643_10023350

Overview

Basic Information

• Taxon OID: 3300020457
• Scaffold ID: Ga0211643_10023350
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3166
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_110
• Coordinates
  • Lat. (^o): -1.8505
  • Long. (^o): -84.6318
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000983	Metagenome / Metatranscriptome	814	Y
F099870	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211643_100233501	F000983	N/A	MKSYHILDCDKQQKIADSLYGYYVGITANREPKEFWNHLSRKEIQDYFSIPNNPCKEWFDSLGLKVRDMSFTIYNEDIGTDIHRDEPPVIAKINFPVLNTTDTYNVWFDDYANEIDRVECDKPIVLRSDILHTVEIGKHAVFPRI
Ga0211643_100233504	F099870	N/A	MDWNKVLLSDCAVYKIGSRIVYPIFRCGFTSIRDSADKKYVNNKIKFKNIDVLIRDPGDRFMSGVNEYARQNKVDVEDTWNLIAENKLVDKHFAPQYVWLMHLYKFHKGTITLYPFDDIKKFTKLHKGKWSSKSKEEKMPLAQIEEFVEKDFILLNHLNKTLELDKLLKYVLS