Scaffold Ga0211643_10017402

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211643_10017402

Scaffold Ga0211643_10017402

Overview

Basic Information
Taxon OID	3300020457 Open in IMG/M
Scaffold ID	Ga0211643_10017402 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3722
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_110
Coordinates	Lat. (^o)	-1.8505	Long. (^o)	-84.6318	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013833	Metagenome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211643_100174027	F013833	GGAG	METRWTVNGNDYNPDLHKKPTENLETLMKELTKRLEEESPKNKETVAYLLGCRDIVEYLATGKLPSQKNRDPIKTDPALQFKEKVNFVPRYL

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